EMBOSS explorer

distmat

Creates a distance matrix from multiple alignments (read the manual)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Required section
Method to use
Method to use
Additional section
Use the ambiguous codes in the calculation.?
Weight given to gaps
Base position to analyse
Calculate the nucleotide Jin-Nei parameter 'a'?
Nucleotide Jin-Nei parameter 'a'
Output section
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.