EMBOSS explorer

sirna

Finds siRNA duplexes in mRNA (read the manual)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Sequence input options
Select probes for Pol III expression vectors?
Select only regions that start with AA?
Select only regions that end with TT?
Allow regions with 4 repeats of a base?
Output section
Output report format
Output sequence format
Show the two bases before the output 21 base probe?
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.