EMBOSS explorer

prophecy

Creates matrices/profiles from multiple alignments (read the manual)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Select type

Scoring matrix. Use one of the following two fields:

  1. To access a standard EMBOSS data file, enter the name here: (default is EBLOSUM62 for protein, EDNAFULL for nucleic)
  2. To upload a data file from your local computer, select it here:
Required section
Enter a name for the profile
Profile type specific options
Enter threshold reporting percentage
Gap options
Gap opening penalty
Gap extension penalty
Output section
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.